🧬 gget enables efficient querying of genomic reference databases

OpenAlpha_Evolve is an open-source Python framework inspired by the groundbreaking research on autonomous coding agents like DeepMind's AlphaEvolve.

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

An open-source platform for developing protein models beyond AlphaFold.

An implementation of the DeepMind's AlphaFold based on PyTorch for research

Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

Install alphafold on the local machine, get out of docker.

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

Exploring Evolution-aware & free protein language models as protein function predictors

[Nature Machine Intelligence] ImmunoStruct enables multimodal deep learning for immunogenicity prediction

A toolkit developed to predict and analyze PROTAC-mediated ternary complexes using AlphaFold3 and Boltz-1.

Singularity recipe for AlphaFold

Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing

A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and checking the druggability with fpocket/Amber.

This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.

Screen interactions with AlphaFold Multimer

A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.

Design data and process for the AdaptyvBio protein design competition