rxn4chemistry / rxnmapper Star 364 Code Issues Pull requests RXNMapper: Unsupervised attention-guided atom-mapping. Code complementing our Science Advances publication on "Extraction of organic chemistry grammar from unsupervised learning of chemical reactions" (https://un5u6jh4caqx6qn2xb6n3t9h1eja2.julianrbryant.com/content/7/15/eabe4166). chemistry transformer reactions smiles rxn atom-mapping Updated Feb 13, 2026 Python
OpenFreeEnergy / kartograf Star 38 Code Issues Pull requests Discussions This package contains tools for setting up hybrid-topology FE calculations python free-energy-calculations hybrid-topology openfe atom-mapping Updated Apr 3, 2026 Python
yvsgrndjn / atommap_eval Star 5 Code Issues Pull requests evaluate chemical equivalence of atom-mapped reactions against ground truth. cheminformatics isomorphism atom-mapping Updated Mar 13, 2026 Python
neo-chem-synth-wave / atom-to-atom-mapping Star 4 Code Issues Pull requests The chemical reaction compound atom-to-atom mapping research project. aam chemical-reactions chemical-compounds atom-mapping atom-to-atom-mapping Updated May 6, 2025 Python
DanaResearchGroup / AM3DB Star 1 Code Issues Pull requests 3D Atom Mapping Database kinetics 3d atom-mapping Updated Dec 29, 2022 Python